Faculty of Biological Sciences

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Bioinformatics Group

Software and Databases

ACT

Arabidopsis thaliana co-expression tool. ACT Abstract

SitesBase

Database of ligand binding site similarities. SitesBase Abstract

Q-SiteFinder

Ligand binding site prediction. Q-SiteFinder Abstract

GO-At

Gene function prediction in Arabidopsis thaliana. GO-At Abstract

metaTIGER

A metabolic evolution resource. metaTIGER abstract

TMB-Web

Amino acid composition based transmembrane barrel search. TMB-Hunt Abstract

PPI-Pred

Prediction of protein-protein interfaces. PPI-Pred Abstract

Petunia SmRNA Blast

Tool for BLAST searching against Petunia Small RNAs. Petunia SmRNA BLAST Abstract

PAGODA

Gene function prediction in Plasmodium Falciparum. PAGODA Abstract

PlasmoPredict

Gene function prediction in Plasmodium Falciparum. PlasmoPredict Abstract

KvDB

Accurately Predicting the Effect of Genetic Variants in Voltage-Gated Potassium Channels. KvDB Abstract

BRS-nonint

Balanced random sampling of non-interactions, BRS-nonint, is a method of sampling non-interactions randomly from the complement graph of protein-protein interactions, while the degree of each protein in the 'positive' dataset (interactions) equals to that in the 'negative' dataset (non-interactions).

Source Code

TOPS

Topology Of Protein Structure. TOPS Abstract

Helix Packing Pair

Software for calculation of helix packing angles in protein structures. Helix Packing Pair Abstract